Publications

The list on Google Scholar may be more up-to-date…

Peer-Reviewed Articles

Lin, Q., E.E. Goldberg, T. Leitner, C. Molina-Paris, A.A. King, and E. Romero-Severson. 2024. The number and pattern of viral genomic reassortments are not necessarily identifiable from segment trees. Molecular Biology and Evolution 41:msae078.
[journal] [preprint]

Goldberg, E.E., E. Lundgren, E.O. Romero-Severson, and T. Leitner. 2024. Inferring viral transmission time from phylogenies for known transmission pairs. Molecular Biology and Evolution 41:msad282.
[journal] [preprint] [code]

Goldberg, E.E., Q. Lin, E.O. Romero-Severson, and R. Ke. 2023. Swift and extensive Omicron outbreak in China after sudden exit from ‘zero-COVID’ policy. Nature Communications 14:3888.
[journal] [preprint] [code]

Colella, J.P., M.E. Cobos, I. Salinas, J.A. Cook, and The PICANTE Consortium. 2023. Advancing the central role of non-model biorepositories in predictive modeling of emerging pathogens. PLoS Pathogens 19:e1011410.
[journal]

van Dorp, C.H.*, E.E. Goldberg*, N. Hengartner, R. Ke, and E.O. Romero-Severson. 2022. Global estimates of the fitness advantage of SARS-CoV-2 variant Omicron. Virus Evolution 8:veac089.
[journal] [scholar] [code]

Goldberg, E.E. and T.D. Price. 2022. Effects of plasticity on elevational range size and species richness. The American Naturalist 200:316-329.
[journal] [scholar]

van Dorp, C.H.*, E.E. Goldberg*, N. Hengartner, R. Ke, and E.O. Romero-Severson. 2021. Estimating the strength of selection for new SARS-CoV-2 variants. Nature Communications 12:7239.
[journal] [scholar] [code]

Harkness, A., E.E. Goldberg, and Y. Brandvain. 2021. Diversification or collapse of self-incompatibility haplotypes as a rescue process. The American Naturalist 197:E89-E109.
[journal] [scholar]

Shafir, A., D. Azouri, E.E. Goldberg, and I. Mayrose. 2020. Heterogeneity in the rate of molecular sequence evolution substantially impacts the accuracy of detecting shifts in diversification rates. Evolution 74:1620-1639.
[journal] [pdf] [scholar] [data]

Goldberg, E.E. and J. Foo. 2020. Memory in trait macroevolution. The American Naturalist 195:300-314.
[journal] [pdf] [scholar]

Zenil-Ferguson, R., J.G. Burleigh, W.A. Freyman, B. Igić, I. Mayrose, and E.E. Goldberg. 2019. Interaction among ploidy, breeding system and lineage diversification. New Phytologist 224:1252-1265.
[journal] [pdf] [supp] [scholar]

Harmon, L.J., C.S. Andreazzi, F. Débarre, J. Drury, E.E. Goldberg, A.B. Martins, C.J. Melián, A. Narwani, S.L. Nuismer, M.W. Pennell, S.M. Rudman, O. Seehausen, D. Silvestro, M. Weber, and B. Matthews. 2019. Detecting the macroevolutionary signal of species interactions. Journal of Evolutionary Biology 32:769-782.
[journal] [pdf] [scholar]

Harkness, A., E.E. Goldberg, and Y. Brandvain. 2019. The evolutionary response of mating system to heterosis. Journal of Evolutionary Biology 32:476-490.
[journal] [pdf] [scholar]

Blackmon, H., J. Justison, I. Mayrose, and E.E. Goldberg. 2019. Meiotic drive shapes rates of karyotype evolution in mammals. Evolution 73:511-523.
[journal] [pdf] [scholar]

Huang, D., E.E. Goldberg, L.M. Chou, and K. Roy. 2018. The origin and evolution of coral species richness in a marine biodiversity hotspot. Evolution 72:288-302.
[journal] [pdf] [supp] [data] [digest] [scholar]

Rabosky, D.L.* and E.E. Goldberg*. 2017. FiSSE: A simple nonparametric test for the effects of a binary character on lineage diversification rates. Evolution 71:1432-1442.
[journal] [pdf] [data] [code] [benchmark scripts] [digest] [scholar]

Grossenbacher, D.L., Y. Brandvain, J.R. Auld, M. Burd, P.-O. Cheptou, J.K. Conner, A.G. Grant, S.M. Hovick, J.R. Pannell, A. Pauw, T. Petanidou, A.M. Randle, R. Rubio de Casas, J. Vamosi, A. Winn, B. Igić, J.W. Busch, S. Kalisz, and E.E. Goldberg. 2017. Self-compatibility is overrepresented on islands. New Phytologist 215:469-478.
[journal] [pdf] [scholar]

Goldberg, E.E., S.P. Otto, J.C. Vamosi, I. Mayrose, N. Sabath, R. Ming, and T.-L. Ashman. 2017. Macroevolutionary synthesis of flowering plant sexual systems. Evolution 71:898-912.
[journal] [pdf] [data] [scholar]

Zhan, S.H, M. Drori, E.E. Goldberg, S.P. Otto, and I. Mayrose. 2016. Phylogenetic evidence for cladogenetic polyploidization in land plants. American Journal of Botany 103:1252-1258.
[journal] [pdf] [data] [scholar]

Glick, L., N. Sabath, T.-L. Ashman, E.E. Goldberg, and I. Mayrose. 2016. Polyploidy and sexual system in angiosperms—is there an association? American Journal of Botany 103:1223-1235.
[journal] [pdf] [scholar]

Grossenbacher, D., R.D. Briscoe Runquist, E.E. Goldberg, and Y. Brandvain. 2016. No association between plant mating system and geographic range overlap. American Journal of Botany 103:110-117.
[journal] [pdf] [data] [scholar]

Sabath, N., E.E. Goldberg, L. Glick, M. Einhorn, T.-L. Ashman, R. Ming, S.P. Otto, J.C. Vamosi, and I. Mayrose. 2016. Dioecy does not consistently accelerate or slow lineage diversification across multiple genera of angiosperms. New Phytologist 209:1290-1300.
[journal] [pdf] [data] [scholar]

Pannell, J.R., J.R. Auld, Y. Brandvain, M. Burd, J.W. Busch, P.-O. Cheptou, J.K. Conner, E.E. Goldberg, A.-G. Grant, D.L. Grossenbacher, S.M. Hovick, B. Igić, S. Kalisz, T. Petanidou, A.M. Randle, R. Rubio de Casas, C.A. Pauw, J.C. Vamosi, and A.A. Winn. 2015. The scope of Baker’s law. New Phytologist 208:656-667.
[journal] [pdf] [scholar]

Smith, S.D. and E.E. Goldberg. 2015. Tempo and mode of flower color evolution. American Journal of Botany 102:1014-1025.
[journal] [pdf] [data] [scholar]

Grossenbacher, D., R. Briscoe Runquist, E.E. Goldberg, and Y. Brandvain. 2015. Geographic range size is predicted by plant mating system. Ecology Letters 18:706-713.
[journal] [pdf] [data] [highlight] [scholar]

Huang, D., E.E. Goldberg, and K. Roy. 2015. Fossils, phylogenies, and the challenge of preserving evolutionary history in the face of anthropogenic extinctions. Proceedings of the National Academy of Sciences USA 112:4909-4914.
[journal] [pdf] [code] [scholar]

Rabosky, D.L.* and E.E. Goldberg*. 2015. Model inadequacy and mistaken inferences of trait-dependent speciation. Systematic Biology 64:340-355.
[journal] [pdf] [data] [scholar]

Servedio, M.R., Y. Brandvain, S. Dhole, C.L. Fitzpatrick, E.E. Goldberg, C.A. Stern, J. Van Cleve, and D.J. Yeh. 2014. Not just a theory: The utility of mathematical models in evolutionary biology. PLoS Biology 12:e1002017.
[journal] [pdf] [scholar]

The Tree of Sex Consortium: T.-L. Ashman, D. Bachtrog, H. Blackmon, E.E. Goldberg, M.W. Hahn, M. Kirkpatrick, J. Kitano, J.E. Mank, I. Mayrose, R. Ming, S.P. Otto, C.L. Peichel, M.W. Pennell, N. Perrin, L. Ross, N. Valenzuela, and J.C. Vamosi. 2014. Tree of sex: A database of sexual systems. Scientific Data 1:140015.
[journal] [pdf] [data] [website] [scholar]

Fagan, W.F, Y.E. Pearson, E.A. Larsen, H.J. Lynch, J.B. Turner, H. Staver, A.E. Noble, S. Bewick, and E.E. Goldberg. 2013. Phylogenetic prediction of the maximum per capita rate of population growth. Proceedings of the Royal Society B 280:20130523.
[journal] [pdf] [data] [scholar]

Goldberg, E.E. and B. Igić. 2012. Tempo and mode in plant breeding system evolution. Evolution 66:3701-3709.
[journal] [pdf] [data] [code] [scholar]

Goldberg, E.E., R. Lande, and T.D. Price. 2012. Population regulation and character displacement in a seasonal environment. The American Naturalist 179:693-705.
[journal] [pdf] [blurb] [scholar]

Goldberg, E.E., L.T. Lancaster, and R.H. Ree. 2011. Phylogenetic inference of reciprocal effects between geographic range evolution and diversification. Systematic Biology 60:451-465.
[journal] [pdf] [data, scripts] [code] [scholar]

Anacker, B.L.*, J.B. Whittall*, E.E. Goldberg, and S.P. Harrison. 2011. Origins and consequences of serpentine endemism in the California flora. Evolution 65:365-376.
[journal] [pdf] [scholar]

Robertson, K., E.E. Goldberg, and B. Igić. 2011. Comparative evidence for the correlated evolution of polyploidy and self-compatibility in Solanaceae. Evolution 65:139-155.
[journal] [pdf] [scholar]

Goldberg, E.E., J.R. Kohn, R. Lande, K.A. Robertson, S.A. Smith, B. Igić. 2010. Species selection maintains self-incompatibility. Science 330:493-495.
[journal] [pdf] [data] [commentary] [scholar]

Goldberg, E.E., H.J. Lynch, M.G. Neubert, and W.F. Fagan. 2010. Effects of branching spatial structure and life history on the asymptotic growth rate of a population. Theoretical Ecology 3:137-152.
[journal] [pdf] [scholar]

Goldberg, E.E.* and B. Igić*. 2008. On phylogenetic tests of irreversible evolution. Evolution 62:2727-2741.
[journal] [pdf] [scholar]

Goldberg, E.E. and R. Lande. 2007. Species’ borders and dispersal barriers. The American Naturalist 170:297-304.
[journal] [pdf] [scholar]

Roy, K.* and E.E. Goldberg*. 2007. Origination, extinction and dispersal: integrative models for understanding present-day diversity gradients. The American Naturalist 170:S71-S85.
[journal] [pdf] [scholar]

Goldberg, E.E. and R. Lande. 2006. Ecological and reproductive character displacement on an environmental gradient. Evolution 60:1344-1357.
[journal] [pdf] [scholar]

Goldberg, E.E., K. Roy, R. Lande, and D. Jablonski. 2005. Diversity, endemism, and age distributions in macroevolutionary sources and sinks. The American Naturalist 165:623-633.
[journal] [pdf] [scholar]

* Denotes equal contributions

Other Preprints

Feng, Y., E.E. Goldberg, M. Kupperman, X. Zhang, Y. Lin, and R. Ke. 2024. CovTransformer: a transformer model for SARS-CoV-2 lineage frequency forecasting.
[preprint]

Schwery, O., W. Freyman, and E.E. Goldberg. 2023. adequaSSE: Model adequacy testing for trait-dependent diversification models.
[preprint]

Other Reviewed Contributions

Harkness, A., Y. Brandvain, and E.E. Goldberg. 2018. Evolution of Plant Mating Systems. In K. Pfennig, ed. Oxford Bibliographies in Evolutionary Biology. Oxford University Press.
[publisher] [pdf]

Goldberg, E.E. 2013. Species selection. In J. Losos, ed. The Princeton Guide to Evolution. Princeton University Press.
[publisher]

Please use the journal links when possible. Local pdf files are provided only to ensure access when publisher websites are unreachable.